Package: SAMtool
Type: Package
Title: Stock Assessment Methods Toolkit
Version: 1.9.2
Authors@R: c(person("Quang", "Huynh", email = "quang@bluematterscience.com", role = c("aut", "cre")), 
  person("Tom", "Carruthers", email = "tom@bluematterscience.com", role = "aut"),
  person("Adrian", "Hordyk", email = "adrian@bluematterscience.com", role = "aut"))
Date: 2026-06-17
Maintainer: Quang Huynh <quang@bluematterscience.com>
Description: Simulation tools for closed-loop simulation are provided
        for the 'MSEtool' operating model to inform data-rich
        fisheries. 'SAMtool' provides a conditioning model, assessment
        models of varying complexity with standardized reporting,
        model-based management procedures, and diagnostic tools for
        evaluating assessments inside closed-loop simulation.
License: GPL-3
Depends: R (>= 4.1.0), MSEtool (>= 3.0.0)
Imports: TMB (>= 1.9.0), abind, dplyr, gplots, graphics, methods,
        pbapply, rmarkdown, snowfall, stats, utils, vars
LinkingTo: TMB, RcppEigen
Suggests: caret, corpcor, covr, extraDistr, ggplot2, Gmisc, knitr,
        mvtnorm, numDeriv, reshape2, shiny, testthat, tmbstan, usethis
LazyData: yes
LazyLoad: yes
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Encoding: UTF-8
URL: https://openmse.com, https://samtool.openmse.com,
        https://github.com/Blue-Matter/SAMtool
BugReports: https://github.com/Blue-Matter/SAMtool/issues
Config/pak/sysreqs: cmake make libuv1-dev
Repository: https://blue-matter.r-universe.dev
Date/Publication: 2026-06-18 07:03:42 UTC
RemoteUrl: https://github.com/Blue-Matter/SAMtool
RemoteRef: HEAD
RemoteSha: 09ba08a8930418a6c87daa0b285f06dae2312d47
NeedsCompilation: yes
Packaged: 2026-06-24 11:00:34 UTC; root
Author: Quang Huynh [aut, cre],
  Tom Carruthers [aut],
  Adrian Hordyk [aut]