Package: SAMtool 1.8.0
SAMtool: Stock Assessment Methods Toolkit
Simulation tools for closed-loop simulation are provided for the 'MSEtool' operating model to inform data-rich fisheries. 'SAMtool' provides a conditioning model, assessment models of varying complexity with standardized reporting, model-based management procedures, and diagnostic tools for evaluating assessments inside closed-loop simulation.
Authors:
SAMtool_1.8.0.tar.gz
SAMtool_1.8.0.zip(r-4.5)SAMtool_1.8.0.zip(r-4.4)SAMtool_1.8.0.zip(r-4.3)
SAMtool_1.8.0.tgz(r-4.4-x86_64)SAMtool_1.8.0.tgz(r-4.4-arm64)SAMtool_1.8.0.tgz(r-4.3-x86_64)SAMtool_1.8.0.tgz(r-4.3-arm64)
SAMtool_1.8.0.tar.gz(r-4.5-noble)SAMtool_1.8.0.tar.gz(r-4.4-noble)
SAMtool_1.8.0.tgz(r-4.4-emscripten)SAMtool_1.8.0.tgz(r-4.3-emscripten)
SAMtool.pdf |SAMtool.html✨
SAMtool/json (API)
NEWS
# Install 'SAMtool' in R: |
install.packages('SAMtool', repos = c('https://blue-matter.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/blue-matter/samtool/issues
Last updated 14 hours agofrom:4904765ec2. Checks:OK: 9. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 05 2024 |
R-4.5-win-x86_64 | OK | Nov 05 2024 |
R-4.5-linux-x86_64 | OK | Nov 05 2024 |
R-4.4-win-x86_64 | OK | Nov 05 2024 |
R-4.4-mac-x86_64 | OK | Nov 05 2024 |
R-4.4-mac-aarch64 | OK | Nov 05 2024 |
R-4.3-win-x86_64 | OK | Nov 05 2024 |
R-4.3-mac-x86_64 | OK | Nov 05 2024 |
R-4.3-mac-aarch64 | OK | Nov 05 2024 |
Exports:AssessmentcDDcDD_SScheck_RCMdatacompare_modelscompare_RCMDD_SSDD_TMBDDSS_4010DDSS_75MSYDDSS_MSYdiagnosticdiagnostic_AMgetindsHCR_escapementHCR_FBHCR_fixedFHCR_MSYHCR_rampHCR_segmentHCR40_10HCR60_20HCR80_40MSYHCRlinmahplotmake_interim_MPmake_MPmake_projection_MPPerfectplotplot_betavarplot_compositionplot_crosscorrplot_lognormalvarplot_residualsplot_SRplot_steepnessplot_timeseriesposteriorPRBcalcprelim_AMProbsprofprofileprojectprojectionRCMRCM_assessRCM2MOMRCMdataRCModelRCMstanretroretrospectiveretrospective_AMSCASCA_4010SCA_75MSYSCA_CALSCA_DDMSCA_MSYSCA_PopeSCA_RWMSCA2ShortcutShortcut2simsimulateSPSP_4010SP_75MSYSP_FoxSP_MSYSP_productionSP_SSSSSSSS_4010SSS_75MSYSSS_MSYsummaryTAC_MSYuserguideVPA
Dependencies:abindbase64encbitopsbslibcachemcaToolsclicolorspacedigestdplyrevaluatefansifarverfastmapfontawesomefsgenericsggplot2ggrepelgluegplotsgridExtragtablegtoolshighrhtmltoolsisobandjquerylibjsonliteKernSmoothknitrlabelinglatticelifecyclelmtestmagrittrMASSMatrixmemoisemgcvmimeMSEtoolmunsellnlmepbapplypillarpkgconfigR6rappdirsRColorBrewerRcppRcppArmadilloRcppEigenrlangrmarkdownsandwichsassscalessnowsnowfallstrucchangetibbletidyselecttinytexTMBurcautf8varsvctrsviridisLitewithrxfunyamlzoo